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Create regression tables for publication. Currently supports lm', glm', survreg', and ivreg outputs.
Perform interactive occupation coding during interviews as described in Peycheva, D., Sakshaug, J., Calderwood, L. (2021) <doi:10.2478/jos-2021-0042> and Schierholz, M., Gensicke, M., Tschersich, N., Kreuter, F. (2018) <doi:10.1111/rssa.12297>. Generate suggestions for occupational categories based on free text input, with pre-trained machine learning models in German and a ready-to-use shiny application provided for quick and easy data collection.
This package provides tools for converting Open-Source Tools for Training Resources (OTTR) courses into Leanpub or Coursera courses. ottrpal is for use with the OTTR Template repository to create courses.
Streamlines the post-processing, summarization, and visualization of outbreaker2 output via a suite of helper functions. Facilitates tidy manipulation of posterior samples, integration with case metadata, generation of diagnostic plots and summary statistics.
Sample from the limiting distributions of empirical Wasserstein distances under the null hypothesis and under the alternative. Perform a two-sample test on multivariate data using these limiting distributions and binning.
Two-stage design for single-arm phase II trials with time-to-event endpoints (e.g., clinical trials on immunotherapies among cancer patients) can be calculated using this package. Two notable advantages of the package: 1) It provides flexible choices from three design methods (optimal, minmax, and admissible), and 2) the power of the design is more accurately calculated using the exact variance in the one-sample log-rank test. The package can be used for 1) planning the sample sizes and other design parameters, and 2) conducting the interim and final analyses for the Go/No-go decisions. More details about the design method can be found in: Wu, J, Chen L, Wei J, Weiss H, Chauhan A. (2020). <doi:10.1002/pst.1983>.
This package provides a collection of aesthetically appealing color palettes for effective data visualization with ggplot2'. Palettes support both discrete and continuous data.
Advanced forecasting algorithms for long-term energy demand at the national or regional level. The methodology is based on Grandón et al. (2024) <doi:10.1016/j.apenergy.2023.122249>; Zimmermann & Ziel (2024) <doi:10.1016/j.apenergy.2025.125444>. Real-time data, including power demand, weather conditions, and macroeconomic indicators, are provided through automated API integration with various institutions. The modular approach maintains transparency on the various model selection processes and encompasses the ability to be adapted to individual needs. oRaklE tries to help facilitating robust decision-making in energy management and planning.
An approach to outlier detection in RNA-seq and related data based on five statistics. OutSeekR implements an outlier test by comparing the distributions of these statistics in observed data with those of simulated null data.
This package provides functions to download and tidy statistical data published by the Office for National Statistics <https://www.ons.gov.uk>. Covers GDP, inflation (CPI, CPIH, RPI), unemployment, employment, wages, trade, retail sales, house prices, productivity, population, and public sector finances. Most series are fetched from the ONS website using its CSV time series endpoint. House price data is sourced from HM Land Registry <https://www.gov.uk/government/organisations/land-registry>. Data is cached locally between sessions.
This package performs one-way tests in independent groups designs including homoscedastic and heteroscedastic tests. These are one-way analysis of variance (ANOVA), Welch's heteroscedastic F test, Welch's heteroscedastic F test with trimmed means and Winsorized variances, Brown-Forsythe test, Alexander-Govern test, James second order test, Kruskal-Wallis test, Scott-Smith test, Box F test, Johansen F test, Generalized tests equivalent to Parametric Bootstrap and Fiducial tests, Alvandi's F test, Alvandi's generalized p-value, approximate F test, B square test, Cochran test, Weerahandi's generalized F test, modified Brown-Forsythe test, adjusted Welch's heteroscedastic F test, Welch-Aspin test, Permutation F test. The package performs pairwise comparisons and graphical approaches. Also, the package includes Student's t test, Welch's t test and Mann-Whitney U test for two samples. Moreover, it assesses variance homogeneity and normality of data in each group via tests and plots (Dag et al., 2018, <https://journal.r-project.org/archive/2018/RJ-2018-022/RJ-2018-022.pdf>).
Represents the basis functions for B-splines in a simple matrix formulation that facilitates, taking integrals, derivatives, and making orthogonal the basis functions.
Algorithms to detect high-dimensional outliers. The minimum diagonal product of Ro, Zou, Wang and Yin (2015) <doi:10.1093/biomet/asv021>, the algorithm of Wilkinson (2018) <doi:10.1109/TVCG.2017.2744685>, and the distances of distances of Lee and Jeon (2025) <doi:10.48550/arXiv.2511.02199>.
Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2018) <doi:10.1080/03610918.2018.1429617> algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
Pure-R implementation of univariate binary-class ODA (UniODA), univariate multiclass ODA (MultiODA), and binary Classification Tree Analysis (CTA). Supports ordered and categorical attributes, priors-on inverse-frequency weighting, MAXSENS / SAMPLEREP / first-identified tie-breaking, true leave-one-out cross-validation, and Monte Carlo Fisher-randomization p-values. Covered UniODA, MultiODA, and binary CTA fixtures are tested for parity against MegaODA.exe and CTA.exe outputs.
Connects to Google cloud vision <https://cloud.google.com/vision> to perform label detection and repurpose this feature for image classification.
Distributed reproducible computing framework, adopting ideas from git, docker and other software. By defining a lightweight interface around the inputs and outputs of an analysis, a lot of the repetitive work for reproducible research can be automated. We define a simple format for organising and describing work that facilitates collaborative reproducible research and acknowledges that all analyses are run multiple times over their lifespans.
All the methods in this package generate a vector of uniform order statistics using a beta distribution and use an inverse cumulative distribution function for some distribution to give a vector of random order statistic variables for some distribution. This is much more efficient than using a loop since it is directly sampling from the order statistic distribution.
Applies an objective Bayesian method to the Mb capture-recapture model to estimate the population size N. The Mb model is a class of capture-recapture methods used to account for variations in capture probability due to animal behavior. Under the Mb formulation, the initial capture of an animal may effect the probability of subsequent captures due to their becoming "trap happy" or "trap shy.".
Estimates rates for continuous character evolution under Brownian motion and Ornstein-Uhlenbeck based Hansen models that allow both the strength of the pull and stochastic motion to vary across selective regimes. Beaulieu et al. (2012).
This package provides utilities for processing of Oxy-Bisulfite microarray data (e.g. via the Illumina Infinium platform, <http://www.illumina.com>) with tandem arrays, one using conventional bisulfite conversion, the other using oxy-bisulfite conversion.
Shiny Application to visualize Olympic Data. From 1896 to 2016. Even Winter Olympics events are included. Data is from Kaggle at <https://www.kaggle.com/heesoo37/120-years-of-olympic-history-athletes-and-results>.
Convenient download functions enabling access Open Source Asset Pricing (OpenAP) data. This package enables users to download predictor portfolio returns (over 200 cross-sectional predictors with multiple portfolio construction methods) and firm characteristics (over 200 characteristics replicated from the academic asset pricing literature). Center for Research in Security Prices (CRSP)-based variables such as Price, Size, and Short-term Reversal can be downloaded with a Wharton Research Data Services (WRDS, <https://wrds-www.wharton.upenn.edu/>) subscription. For a full list of what is available, see <https://www.openassetpricing.com/>.
The optimal level of significance is calculated based on a decision-theoretic approach. The optimal level is chosen so that the expected loss from hypothesis testing is minimized. A range of statistical tests are covered, including the test for the population mean, population proportion, and a linear restriction in a multiple regression model. The details are covered in Kim and Choi (2020) <doi:10.1111/abac.12172>, and Kim (2021) <doi:10.1080/00031305.2020.1750484>.