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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-mafdb-exac-r1-0-hs37d5 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.ExAC.r1.0.hs37d5
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from ExAC release 1.0 for hs37d5
Description:

Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0) for the human genome version hs37d5.

r-mu6500subdcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu6500subdcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mu6500subdcdf
Description:

This package provides a package containing an environment representing the Mu6500subD.CDF file.

r-magar 1.18.0
Propagated dependencies: r-upsetr@1.4.0 r-snpstats@1.60.0 r-rnbeads-hg38@1.42.1 r-rnbeads-hg19@1.42.0 r-rnbeads@2.28.0 r-rjson@0.2.23 r-reshape2@1.4.5 r-plyr@1.8.9 r-jsonlite@2.0.0 r-impute@1.84.0 r-igraph@2.2.1 r-hdf5array@1.38.0 r-ff@4.5.2 r-doparallel@1.0.17 r-data-table@1.17.8 r-crlmm@1.68.0 r-bigstatsr@1.6.2 r-argparse@2.3.1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/MPIIComputationalEpigenetics/MAGAR
Licenses: GPL 3
Build system: r
Synopsis: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
Description:

"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.

r-meat 1.22.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/sarah-voisin/MEAT
Licenses: Expat
Build system: r
Synopsis: Muscle Epigenetic Age Test
Description:

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

r-mwgcod-db 3.4.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mwgcod.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod)
Description:

Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod) assembled using data from public repositories.

r-mirtarrnaseq 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mirTarRnaSeq
Licenses: Expat
Build system: r
Synopsis: mirTarRnaSeq
Description:

mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

r-msbackendmassbank 1.18.2
Propagated dependencies: r-spectra@1.20.0 r-s4vectors@0.48.0 r-protgenerics@1.42.0 r-mscoreutils@1.21.0 r-iranges@2.44.0 r-dbi@1.2.3 r-data-table@1.17.8 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/RforMassSpectrometry/MsBackendMassbank
Licenses: Artistic License 2.0
Build system: r
Synopsis: Mass Spectrometry Data Backend for MassBank record Files
Description:

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

r-multistateqtl 2.2.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/dunstone-a/multistateQTL
Licenses: GPL 3
Build system: r
Synopsis: Toolkit for the analysis of multi-state QTL data
Description:

This package provides a collection of tools for doing various analyses of multi-state QTL data, with a focus on visualization and interpretation. The package multistateQTL contains functions which can remove or impute missing data, identify significant associations, as well as categorise features into global, multi-state or unique. The analysis results are stored in a QTLExperiment object, which is based on the SummarisedExperiment framework.

r-maskbad 1.54.0
Propagated dependencies: r-gcrma@2.82.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/maskBAD
Licenses: GPL 2+
Build system: r
Synopsis: Masking probes with binding affinity differences
Description:

Package includes functions to analyze and mask microarray expression data.

r-moe430bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/moe430bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: moe430bcdf
Description:

This package provides a package containing an environment representing the MOE430B.CDF file.

r-mspurity 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/computational-metabolomics/msPurity/
Licenses: FSDG-compatible
Build system: r
Synopsis: Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
Description:

msPurity R package was developed to: 1) Assess the spectral quality of fragmentation spectra by evaluating the "precursor ion purity". 2) Process fragmentation spectra. 3) Perform spectral matching. What is precursor ion purity? -What we call "Precursor ion purity" is a measure of the contribution of a selected precursor peak in an isolation window used for fragmentation. The simple calculation involves dividing the intensity of the selected precursor peak by the total intensity of the isolation window. When assessing MS/MS spectra this calculation is done before and after the MS/MS scan of interest and the purity is interpolated at the recorded time of the MS/MS acquisition. Additionally, isotopic peaks can be removed, low abundance peaks are removed that are thought to have limited contribution to the resulting MS/MS spectra and the isolation efficiency of the mass spectrometer can be used to normalise the intensities used for the calculation.

r-methped 1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MethPed
Licenses: GPL 2
Build system: r
Synopsis: DNA methylation classifier tool for the identification of pediatric brain tumor subtypes
Description:

Classification of pediatric tumors into biologically defined subtypes is challenging and multifaceted approaches are needed. For this aim, we developed a diagnostic classifier based on DNA methylation profiles. We offer MethPed as an easy-to-use toolbox that allows researchers and clinical diagnosticians to test single samples as well as large cohorts for subclass prediction of pediatric brain tumors. The current version of MethPed can classify the following tumor diagnoses/subgroups: Diffuse Intrinsic Pontine Glioma (DIPG), Ependymoma, Embryonal tumors with multilayered rosettes (ETMR), Glioblastoma (GBM), Medulloblastoma (MB) - Group 3 (MB_Gr3), Group 4 (MB_Gr3), Group WNT (MB_WNT), Group SHH (MB_SHH) and Pilocytic Astrocytoma (PiloAstro).

r-martini 1.30.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/hclimente/martini
Licenses: GPL 3
Build system: r
Synopsis: GWAS Incorporating Networks
Description:

martini deals with the low power inherent to GWAS studies by using prior knowledge represented as a network. SNPs are the vertices of the network, and the edges represent biological relationships between them (genomic adjacency, belonging to the same gene, physical interaction between protein products). The network is scanned using SConES, which looks for groups of SNPs maximally associated with the phenotype, that form a close subnetwork.

r-matchbox 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/matchBox
Licenses: Artistic License 2.0
Build system: r
Synopsis: Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis
Description:

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

r-mogene10stv1cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene10stv1cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mogene10stv1cdf
Description:

This package provides a package containing an environment representing the MoGene-1_0-st-v1.cdf file.

r-mgu74bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mgu74bcdf
Description:

This package provides a package containing an environment representing the MG_U74B.cdf file.

r-metaboliteidmapping 1.0.0
Propagated dependencies: r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/yigbt/metaboliteIDmapping
Licenses: GPL 3
Build system: r
Synopsis: Mapping of Metabolite IDs from Different Sources
Description:

The package provides a comprehensive mapping table of nine different Metabolite ID formats and their common name. The data has been collected and merged from four publicly available source, including HMDB, Comptox Dashboard, ChEBI, and the graphite Bioconductor R package.

r-medips 1.62.0
Propagated dependencies: r-rtracklayer@1.70.0 r-rsamtools@2.26.0 r-preprocesscore@1.72.0 r-iranges@2.44.0 r-gtools@3.9.5 r-genomicranges@1.62.0 r-edger@4.8.0 r-dnacopy@1.84.0 r-bsgenome@1.78.0 r-biostrings@2.78.0 r-biomart@2.66.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MEDIPS
Licenses: FSDG-compatible
Build system: r
Synopsis: DNA IP-seq data analysis
Description:

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.

r-mu6500subacdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu6500subacdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mu6500subacdf
Description:

This package provides a package containing an environment representing the Mu6500subA.CDF file.

r-metaseq 1.50.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/metaSeq
Licenses: Artistic License 2.0
Build system: r
Synopsis: Meta-analysis of RNA-Seq count data in multiple studies
Description:

The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method.

r-mmdiffbamsubset 1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MMDiffBamSubset
Licenses: LGPL 2.0+
Build system: r
Synopsis: Example ChIP-Seq data for the MMDiff package
Description:

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS.

r-moe430bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/moe430bprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type moe430b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430B\_probe\_tab.

r-metabosignal 1.40.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MetaboSignal
Licenses: GPL 3
Build system: r
Synopsis: MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Description:

MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.

r-matter 2.12.0
Propagated dependencies: r-protgenerics@1.42.0 r-matrix@1.7-4 r-irlba@2.3.5.1 r-digest@0.6.39 r-biocparallel@1.44.0 r-biocgenerics@0.56.0 r-bh@1.87.0-1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/kuwisdelu/matter
Licenses: Artistic License 2.0 FSDG-compatible
Build system: r
Synopsis: Out-of-core statistical computing and signal processing
Description:

Toolbox for larger-than-memory scientific computing and visualization, providing efficient out-of-core data structures using files or shared memory, for dense and sparse vectors, matrices, and arrays, with applications to nonuniformly sampled signals and images.

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Total results: 69112