_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-dail 1.5.2
Propagated dependencies: r-tidytext@0.4.3 r-stringr@1.6.0 r-stopwords@2.3 r-readr@2.1.6 r-rcurl@1.98-1.17 r-magrittr@2.0.4 r-lubridate@1.9.4 r-janitor@2.2.1 r-dplyr@1.1.4 r-deflatebr@1.1.2
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dail
Licenses: Expat
Build system: r
Synopsis: Data from Access to Information Law
Description:

Downloads the public data available from the Brazilian Access to Information Law and and performs a search on information requests and appeals made since 2015.

r-descutils 1.0
Propagated dependencies: r-stringr@1.6.0 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=descutils
Licenses: GPL 3
Build system: r
Synopsis: Utilities for Describing and Comparing Data
Description:

This package provides functionality that assists in tabular description and statistical comparison of data.

r-dnamotif 0.1.1
Propagated dependencies: r-rcpp@1.1.0 r-biostrings@2.78.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=DNAmotif
Licenses: GPL 3
Build system: r
Synopsis: DNA Sequence Motifs
Description:

Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.

r-delimtools 0.2.1
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-stringr@1.6.0 r-rlang@1.1.6 r-purrr@1.2.0 r-glue@1.8.0 r-ggtree@4.0.1 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/legalLab/delimtools
Licenses: Expat
Build system: r
Synopsis: Helper Functions for Species Delimitation Analysis
Description:

Helpers functions to process, analyse, and visualize the output of single locus species delimitation methods. For full functionality, please install suggested software at <https://legallab.github.io/delimtools/articles/install.html>.

r-dwdlarger 0.2-0
Propagated dependencies: r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://arxiv.org/pdf/1604.05473
Licenses: GPL 2
Build system: r
Synopsis: Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination
Description:

Solving large scale distance weighted discrimination. The main algorithm is a symmetric Gauss-Seidel based alternating direction method of multipliers (ADMM) method. See Lam, X.Y., Marron, J.S., Sun, D.F., and Toh, K.C. (2018) <doi:10.48550/arXiv.1604.05473> for more details.

r-daff 1.1.1
Propagated dependencies: r-v8@8.0.1 r-jsonlite@2.0.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/edwindj/daff
Licenses: Expat
Build system: r
Synopsis: Diff, Patch and Merge for Data.frames
Description:

Diff, patch and merge for data frames. Document changes in data sets and use them to apply patches. Changes to data can be made visible by using render_diff(). The V8 package is used to wrap the daff.js JavaScript library which is included in the package.

r-dsbaseclient 6.3.5
Propagated dependencies: r-metafor@4.8-0 r-meta@8.2-1 r-gridextra@2.3 r-ggplot2@4.0.1 r-fields@17.1 r-dsi@1.8.0 r-dplyr@1.1.4 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dsBaseClient
Licenses: GPL 3
Build system: r
Synopsis: 'DataSHIELD' Client Side Base Functions
Description:

Base DataSHIELD functions for the client side. DataSHIELD is a software package which allows you to do non-disclosive federated analysis on sensitive data. DataSHIELD analytic functions have been designed to only share non disclosive summary statistics, with built in automated output checking based on statistical disclosure control. With data sites setting the threshold values for the automated output checks. For more details, see citation('dsBaseClient').

r-dupir 1.2.1
Propagated dependencies: r-plotrix@3.8-13
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dupiR
Licenses: GPL 2
Build system: r
Synopsis: Bayesian Inference from Count Data using Discrete Uniform Priors
Description:

We consider a set of sample counts obtained by sampling arbitrary fractions of a finite volume containing an homogeneously dispersed population of identical objects. This package implements a Bayesian derivation of the posterior probability distribution of the population size using a binomial likelihood and non-conjugate, discrete uniform priors under sampling with or without replacement. This can be used for a variety of statistical problems involving absolute quantification under uncertainty. See Comoglio et al. (2013) <doi:10.1371/journal.pone.0074388>.

r-dtaxg 0.1.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=DTAXG
Licenses: GPL 3
Build system: r
Synopsis: Diagnostic Test Assessment in the Absence of Gold Standard
Description:

To calculate the sensitivity and specificity in the absence of gold standard using the Bayesian method. The Bayesian method can be referenced at Haiyan Gu and Qiguang Chen (1999) <doi:10.3969/j.issn.1002-3674.1999.04.004>.

r-degreedaycalc 0.1.0
Propagated dependencies: r-shiny@1.11.1 r-ggplot2@4.0.1 r-dt@0.34.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/almarazkrae-4081/DegreeDayCalc
Licenses: Expat
Build system: r
Synopsis: Degree-Day Phenology Calculator ('shiny' Application)
Description:

This package provides a shiny application to compute daily and cumulative degree-days from minimum and maximum temperatures using average, single triangle, and single sine methods, with optional upper temperature thresholds. The application maps cumulative thermal accumulation to user-defined developmental stage thresholds and supports exporting tabular and graphical outputs. The degree-day approach follows assumptions described by Higley et al. (1986) <doi:10.1093/ee/15.5.999>.

r-digirhythm 2.4
Propagated dependencies: r-zoo@1.8-14 r-xts@0.14.1 r-tidyr@1.3.1 r-stringr@1.6.0 r-readr@2.1.6 r-pracma@2.4.6 r-magrittr@2.0.4 r-lubridate@1.9.4 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://nasserdr.github.io/digiRhythm/
Licenses: GPL 3
Build system: r
Synopsis: Analyzing Animal's Rhythmicity
Description:

Analyze and visualize the rhythmic behavior of animals using the degree of functional coupling (See Scheibe (1999) <doi:10.1076/brhm.30.2.216.1420>), compute and visualize harmonic power, actograms, average activity and diurnality index.

r-datasda 0.1.8
Propagated dependencies: r-tidyr@1.3.1 r-rsda@3.2.5 r-magrittr@2.0.4 r-histdawass@1.0.8 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dataSDA
Licenses: GPL 2+
Build system: r
Synopsis: Datasets and Basic Statistics for Symbolic Data Analysis
Description:

Collects a diverse range of symbolic data and offers a comprehensive set of functions that facilitate the conversion of traditional data into the symbolic data format.

r-dragonking 0.1.0
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/rrrlw/dragonking
Licenses: GPL 3
Build system: r
Synopsis: Statistical Tools to Identify Dragon Kings
Description:

Statistical tests and test statistics to identify events in a dataset that are dragon kings (DKs). The statistical methods in this package were reviewed in Wheatley & Sornette (2015) <doi:10.2139/ssrn.2645709>.

r-denoiseq 0.1.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=denoiSeq
Licenses: GPL 2
Build system: r
Synopsis: Differential Expression Analysis Using a Bottom-Up Model
Description:

Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of a bottom-up model for PCR amplification. This model is developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), <http://www.pnas.org/content/109/39/15865.full>, and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution.

r-dctensor 1.3.1
Propagated dependencies: r-rtensor@1.4.9 r-nntensor@1.3.0 r-mass@7.3-65 r-fields@17.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/rikenbit/dcTensor
Licenses: Expat
Build system: r
Synopsis: Discrete Matrix/Tensor Decomposition
Description:

Semi-Binary and Semi-Ternary Matrix Decomposition are performed based on Non-negative Matrix Factorization (NMF) and Singular Value Decomposition (SVD). For the details of the methods, see the reference section of GitHub README.md <https://github.com/rikenbit/dcTensor>.

r-datefixr 2.0.0
Propagated dependencies: r-rlang@1.1.6 r-lifecycle@1.0.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://docs.ropensci.org/datefixR/
Licenses: GPL 3+
Build system: r
Synopsis: Standardize Dates in Different Formats or with Missing Data
Description:

There are many different formats dates are commonly represented with: the order of day, month, or year can differ, different separators ("-", "/", or whitespace) can be used, months can be numerical, names, or abbreviations and year given as two digits or four. datefixR takes dates in all these different formats and converts them to R's built-in date class. If datefixR cannot standardize a date, such as because it is too malformed, then the user is told which date cannot be standardized and the corresponding ID for the row. datefixR also allows the imputation of missing days and months with user-controlled behavior.

r-diffdf 1.1.2
Propagated dependencies: r-tibble@3.3.0 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://gowerc.github.io/diffdf/
Licenses: Expat
Build system: r
Synopsis: Dataframe Difference Tool
Description:

This package provides functions for comparing two data.frames against each other. The core functionality is to provide a detailed breakdown of any differences between two data.frames as well as providing utility functions to help narrow down the source of problems and differences.

r-dam 0.0.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dam
Licenses: CC0
Build system: r
Synopsis: Data Analysis Metabolomics
Description:

This package provides a collection of functions which aim to assist common computational workflow for analysis of matabolomic data..

r-dkanr 0.1.3
Propagated dependencies: r-tibble@3.3.0 r-stringr@1.6.0 r-purrr@1.2.0 r-jsonlite@2.0.0 r-httr@1.4.7 r-dplyr@1.1.4 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dkanr
Licenses: Expat
Build system: r
Synopsis: Client for the 'DKAN' API
Description:

This package provides functions to facilitate access to the DKAN API (<https://dkan.readthedocs.io/en/latest/apis/index.html>), including the DKAN REST API (metadata), and the DKAN datastore API (data). Includes functions to list, create, retrieve, update, and delete datasets and resources nodes. It also includes functions to search and retrieve data from the DKAN datastore.

r-dyadratios 1.3
Propagated dependencies: r-progress@1.2.3 r-lubridate@1.9.4 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=DyadRatios
Licenses: GPL 2+
Build system: r
Synopsis: Dyad Ratios Algorithm
Description:

Estimates the Dyad Ratios Algorithm for pooling and smoothing poll estimates. The Dyad Ratios Algorithm smooths both forward and backward in time over polling results allowing differences in both question type and polling house. The result is an estimate of a single latent variable that describes the systematic trend over time in the (noisy) polling results. See James A. Stimson (2018) <doi:10.1177/0759106318761614> and the package's vignette for more details.

r-diallelanalysisr 0.6.0
Propagated dependencies: r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=DiallelAnalysisR
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Diallel Analysis with R
Description:

This package performs Diallel Analysis with R using Griffing's and Hayman's approaches. Four different Methods (1: Method-I (Parents + F1's + reciprocals); 2: Method-II (Parents and one set of F1's); 3: Method-III (One set of F1's and reciprocals); 4: Method-IV (One set of F1's only)) and two Models (1: Fixed Effects Model; 2: Random Effects Model) can be applied using Griffing's approach.

r-dmm 3.2-2
Propagated dependencies: r-robustbase@0.99-6 r-pls@2.8-5 r-nadiv@2.18.0 r-matrix@1.7-4 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=dmm
Licenses: GPL 2 GPL 2+ GPL 3
Build system: r
Synopsis: Dyadic Mixed Model for Pedigree Data
Description:

Mixed model analysis for quantitative genetics with multi-trait responses and pedigree-based partitioning of individual variation into a range of environmental and genetic variance components for individual and maternal effects. Method documented in dmmOverview.pdf; dmm is an implementation of dispersion mean model described by Searle et al. (1992) "Variance Components", Wiley, NY. Dmm() can do MINQUE', bias-corrected-ML', and REML variance and covariance component estimates.

r-debinfer 0.4.4
Propagated dependencies: r-truncdist@1.0-2 r-rcolorbrewer@1.1-3 r-plyr@1.8.9 r-pbsddesolve@1.13.7 r-mvtnorm@1.3-3 r-mass@7.3-65 r-desolve@1.40 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/pboesu/debinfer
Licenses: GPL 3
Build system: r
Synopsis: Bayesian Inference for Differential Equations
Description:

This package provides a Bayesian framework for parameter inference in differential equations. This approach offers a rigorous methodology for parameter inference as well as modeling the link between unobservable model states and parameters, and observable quantities. Provides templates for the DE model, the observation model and data likelihood, and the model parameters and their prior distributions. A Markov chain Monte Carlo (MCMC) procedure processes these inputs to estimate the posterior distributions of the parameters and any derived quantities, including the model trajectories. Further functionality is provided to facilitate MCMC diagnostics and the visualisation of the posterior distributions of model parameters and trajectories.

r-dclear 1.0.13
Propagated dependencies: r-tidyr@1.3.1 r-tensorflow@2.20.0 r-stringr@1.6.0 r-rlang@1.1.6 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-rbayesianoptimization@1.2.2 r-purrr@1.2.0 r-phangorn@2.12.1 r-matrixstats@1.5.0 r-matrix@1.7-4 r-igraph@2.2.1 r-dplyr@1.1.4 r-biocparallel@1.44.0 r-biocgenerics@0.56.0 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/ikwak2/DCLEAR
Licenses: GPL 3
Build system: r
Synopsis: Distance Based Cell Lineage Reconstruction
Description:

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

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Total results: 69112